IL_1YJ9_036

3D structure

PDB id

1YJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui Containing a three residue deletion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AUUG*CUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YJ9_036 not in the Motif Atlas

Geometric match to IL_4V9F_036

Geometric discrepancy: 0.0611

The information below is about IL_4V9F_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02203.1

Basepair signature

cWW-cSW-cWW-cWW

Number of instances in this motif group

1

Unit IDs

1YJ9|1|0|A|965
1YJ9|1|0|U|966
1YJ9|1|0|U|967
1YJ9|1|0|G|968
*
1YJ9|1|0|C|1000
1YJ9|1|0|U|1001
1YJ9|1|0|G|1002
1YJ9|1|0|U|1003

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain H

50S RIBOSOMAL PROTEIN L10E