IL_1YJ9_069

3D structure

PDB id

1YJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui Containing a three residue deletion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGAACAC*GACGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YJ9_069 not in the Motif Atlas

Homologous match to IL_4V9F_069

Geometric discrepancy: 0.1121

The information below is about IL_4V9F_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.1

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

1YJ9|1|0|U|1907
1YJ9|1|0|G|1908
1YJ9|1|0|A|1909
1YJ9|1|0|A|1910
1YJ9|1|0|C|1911
1YJ9|1|0|A|1912
1YJ9|1|0|C|1913
*
1YJ9|1|0|G|1926
1YJ9|1|0|A|1927
1YJ9|1|0|C|1928
1YJ9|1|0|G|1929
1YJ9|1|0|A|1930
1YJ9|1|0|A|1931
1YJ9|1|0|G|1932

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain A

50S ribosomal protein L2P