IL_1YJ9_110

3D structure

PDB id

1YJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui Containing a three residue deletion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AAAAG*CUU

Length

8 nucleotides

Bulged bases

1YJ9|1|0|A|1192

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YJ9_110 not in the Motif Atlas

Homologous match to IL_5D8H_003

Geometric discrepancy: 0.3179

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

1YJ9|1|0|A|1191
1YJ9|1|0|A|1192
1YJ9|1|0|A|1193
1YJ9|1|0|A|1194
1YJ9|1|0|G|1195
*
1YJ9|1|0|C|1204
1YJ9|1|0|U|1205
1YJ9|1|0|U|1206

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain I

50S RIBOSOMAL PROTEIN L11P