IL_1YKQ_003

3D structure

PDB id

1YKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Diels-Alder ribozyme

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAGC*GGCCGUGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YKQ_003 not in the Motif Atlas

Geometric match to IL_1YLS_001

Geometric discrepancy: 0.1548

The information below is about IL_1YLS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09570.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L-R

Number of instances in this motif group

1

Unit IDs

1YKQ|1|C|G|102
1YKQ|1|C|A|103
1YKQ|1|C|G|104
1YKQ|1|C|C|105
*
1YKQ|1|D|G|207
1YKQ|1|D|G|208
1YKQ|1|D|C|209
1YKQ|1|D|C|210
1YKQ|1|D|G|211
1YKQ|1|D|U|212
1YKQ|1|D|G|213
1YKQ|1|D|C|214

Current chains

Chain C

Diels-Alder ribozyme

Chain D

Diels-Alder ribozyme

Nearby chains

Chain B

Diels-Alder ribozyme