IL_1YKQ_005
3D structure
- PDB id
- 1YKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Diels-Alder ribozyme
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GUGCCAG*CAAUACUC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1YKQ_005 not in the Motif Atlas
- Geometric match to IL_1YLS_011
- Geometric discrepancy: 0.183
- The information below is about IL_1YLS_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49867.1
- Basepair signature
- cWW-cWW-L-R-L-R-tHW-R-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
1YKQ|1|D|G|211
1YKQ|1|D|U|212
1YKQ|1|D|G|213
1YKQ|1|D|C|214
1YKQ|1|D|C|215
1YKQ|1|D|A|216
1YKQ|1|D|G|217
*
1YKQ|1|D|C|228
1YKQ|1|D|A|229
1YKQ|1|D|A|230
1YKQ|1|D|U|231
1YKQ|1|D|A|232
1YKQ|1|D|C|233
1YKQ|1|D|U|234
1YKQ|1|D|C|235
Current chains
- Chain D
- Diels-Alder ribozyme
Nearby chains
- Chain B
- Diels-Alder ribozyme
- Chain C
- Diels-Alder ribozyme
Coloring options: