IL_1Z43_004

3D structure

PDB id

1Z43 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 7S.S SRP RNA of M. jannaschii

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAG*UAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Z43_004 not in the Motif Atlas

Geometric match to IL_3NDB_006

Geometric discrepancy: 0.2667

The information below is about IL_3NDB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31531.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

13

Unit IDs

1Z43|1|A|G|152
1Z43|1|A|A|153
1Z43|1|A|G|154
*
1Z43|1|A|U|175
1Z43|1|A|A|176
1Z43|1|A|A|177
1Z43|1|A|C|178

Current chains

Chain A

RNA (101-MER)

Nearby chains