IL_1ZBN_011

3D structure

PDB id

1ZBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of BIV TAR hairpin complexed to JDV Tat arginine-rich motif

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1ZBN_011 not in the Motif Atlas

Geometric match to IL_5W1H_001

Geometric discrepancy: 0.3282

The information below is about IL_5W1H_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.4

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

1ZBN|4|A|G|6
1ZBN|4|A|U|7
1ZBN|4|A|G|8
*
1ZBN|4|A|C|22
1ZBN|4|A|C|23

Current chains

Chain A

BIV mRNA

Nearby chains

Chain B

JDV tat protein