IL_1ZBN_034

3D structure

PDB id

1ZBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of BIV TAR hairpin complexed to JDV Tat arginine-rich motif

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GUGUA*UCC

Length

8 nucleotides

Bulged bases

1ZBN|4|A|U|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1ZBN_034 not in the Motif Atlas

Geometric match to IL_4V88_455

Geometric discrepancy: 0.3546

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

1ZBN|4|A|G|6
1ZBN|4|A|U|7
1ZBN|4|A|G|8
1ZBN|4|A|U|9
1ZBN|4|A|A|10
*
1ZBN|4|A|U|21
1ZBN|4|A|C|22
1ZBN|4|A|C|23

Current chains

Chain A

BIV mRNA

Nearby chains

Chain B

JDV tat protein