IL_1ZX7_005

3D structure

PDB id

1ZX7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular Recognition of RNA by Neomycin and a Restricted Neomycin Derivative

Experimental method

X-RAY DIFFRACTION

Resolution

2.15 Å

Loop

Sequence

GAAG*CAC

Length

7 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

1ZX7|1|E|G|7
1ZX7|1|E|A|8
1ZX7|1|E|A|9
1ZX7|1|E|G|10
*
1ZX7|1|F|C|26
1ZX7|1|F|A|27
1ZX7|1|F|C|28

Current chains

Chain E

5'-R(*GP*UP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*GP*G)-3'

Chain F

5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*AP*CP*C)-3'

Nearby chains

Chain G

5'-R(*GP*UP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*GP*G)-3'

Chain H

5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*AP*CP*C)-3'