IL_1ZZN_010

3D structure

PDB id

1ZZN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a group I intron/two exon complex that includes all catalytic metal ion ligands.

Experimental method

X-RAY DIFFRACTION

Resolution

3.37 Å

Loop

Sequence

GGAG*CACAAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1ZZN_010 not in the Motif Atlas

Geometric match to IL_1U6B_011

Geometric discrepancy: 0.115

The information below is about IL_1U6B_011

Detailed Annotation

Reverse kink-turn

Broad Annotation

No text annotation

Motif group

IL_09908.1

Basepair signature

cWW-L-tHH-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

1ZZN|1|B|G|181
1ZZN|1|B|G|182
1ZZN|1|B|A|183
1ZZN|1|B|G|184
*
1ZZN|1|C|C|197
1ZZN|1|C|A|198
1ZZN|1|C|C|199
1ZZN|1|C|A|200
1ZZN|1|C|A|201
1ZZN|1|C|A|202
1ZZN|1|C|C|203

Current chains

Chain B

197-MER

Chain C

5'-R(*AP*AP*GP*CP*CP*AP*CP*AP*CP*AP*AP*AP*CP*CP*AP*GP*AP*CP*GP*GP*CP*C)-3'

Nearby chains