IL_22TU_015
3D structure
- PDB id
- 22TU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome in complex with DHX29
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CCGCUCGUGG*CGGCG
- Length
- 15 nucleotides
- Bulged bases
- 22TU|1|L5|C|183, 22TU|1|L5|C|185, 22TU|1|L5|G|186, 22TU|1|L5|U|187, 22TU|1|L5|G|188
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_22TU_015 not in the Motif Atlas
- Geometric match to IL_7VYX_004
- Geometric discrepancy: 0.3944
- The information below is about IL_7VYX_004
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.6
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
22TU|1|L5|C|180
22TU|1|L5|C|181
22TU|1|L5|G|182
22TU|1|L5|C|183
22TU|1|L5|U|184
22TU|1|L5|C|185
22TU|1|L5|G|186
22TU|1|L5|U|187
22TU|1|L5|G|188
22TU|1|L5|G|189
*
22TU|1|L5|C|252
22TU|1|L5|G|253
22TU|1|L5|G|254
22TU|1|L5|C|255
22TU|1|L5|G|256
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LL
- 60S ribosomal protein L13
- Chain Lh
- 60S ribosomal protein L35
- Chain Lj
- 60S ribosomal protein L37
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