IL_22TU_126

3D structure

PDB id

22TU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with DHX29

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

22TU|1|L5|A|4203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_22TU_126 not in the Motif Atlas

Homologous match to IL_8GLP_137

Geometric discrepancy: 0.0431

The information below is about IL_8GLP_137

Detailed Annotation

AG tHS outside loop

Broad Annotation

AG tHS outside loop

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

22TU|1|L5|G|4191
22TU|1|L5|A|4192
*
22TU|1|L5|U|4202
22TU|1|L5|A|4203
22TU|1|L5|C|4204

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Large ribosomal subunit protein uL16

Chain LT

60S ribosomal protein L21

Chain Lo

60S ribosomal protein L36a