IL_23KA_008

3D structure

PDB id

23KA (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-miR-6074 internal loop in complex with amiloride (Form 2)

Experimental method

X-RAY DIFFRACTION

Resolution

2.59 Å

Loop

Sequence

CUAAG*UAUG

Length

9 nucleotides

Bulged bases

23KA|1|C|U|27

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_23KA_008 not in the Motif Atlas

Geometric match to IL_4K27_004

Geometric discrepancy: 0.0702

The information below is about IL_4K27_004

Detailed Annotation

Receptor of 11-nt loop-receptor motif

Broad Annotation

Loop-receptor motif

Motif group

IL_87739.2

Basepair signature

cWW-tWH-cSH-cWW

Number of instances in this motif group

11

Unit IDs

23KA|1|C|C|8
23KA|1|C|U|9
23KA|1|C|A|10
23KA|1|C|A|11
23KA|1|C|G|12
*
23KA|1|C|U|25
23KA|1|C|A|26
23KA|1|C|U|27
23KA|1|C|G|28

Current chains

Chain C

RNA (35-MER)

Nearby chains

Chain A

RNA (35-MER)