IL_28UH_122

3D structure

PDB id

28UH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

CGAG*UGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UH_122 not in the Motif Atlas

Geometric match to IL_8B0X_122

Geometric discrepancy: 0.0648

The information below is about IL_8B0X_122

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45790.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

28UH|1|a|C|1526
28UH|1|a|G|1527
28UH|1|a|A|1528
28UH|1|a|G|1529
*
28UH|1|a|U|1542
28UH|1|a|G|1543
28UH|1|a|A|1544
28UH|1|a|A|1545
28UH|1|a|G|1546

Current chains

Chain a

23S rRNA

Nearby chains