IL_28UH_148

3D structure

PDB id

28UH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UH_148 not in the Motif Atlas

Homologous match to IL_7A0S_081

Geometric discrepancy: 0.1408

The information below is about IL_7A0S_081

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.4

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

45

Unit IDs

28UH|1|a|C|2350
28UH|1|a|G|2351
28UH|1|a|A|2352
28UH|1|a|G|2353
*
28UH|1|a|C|2364
28UH|1|a|G|2365
28UH|1|a|A|2366
28UH|1|a|G|2367

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain n

Large ribosomal subunit protein uL18

Chain v

Large ribosomal subunit protein bL27