IL_28UH_164

3D structure

PDB id

28UH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

UU*ACUG

Length

6 nucleotides

Bulged bases

28UH|1|a|C|2712, 28UH|1|a|U|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UH_164 not in the Motif Atlas

Homologous match to IL_7A0S_097

Geometric discrepancy: 0.277

The information below is about IL_7A0S_097

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_44609.4

Basepair signature

cWW-cWW

Number of instances in this motif group

22

Unit IDs

28UH|1|a|U|2695
28UH|1|a|U|2696
*
28UH|1|a|A|2711
28UH|1|a|C|2712
28UH|1|a|U|2713
28UH|1|a|G|2714

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17

Chain o

Large ribosomal subunit protein bL19