IL_28UI_039

3D structure

PDB id

28UI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

28UI|1|A|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UI_039 not in the Motif Atlas

Homologous match to IL_6CZR_148

Geometric discrepancy: 0.1475

The information below is about IL_6CZR_148

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

52

Unit IDs

28UI|1|A|G|925
28UI|1|A|G|926
28UI|1|A|G|927
*
28UI|1|A|U|1390
28UI|1|A|U|1391

Current chains

Chain A

16S rRNA

Nearby chains

Chain X

mRNA