IL_28UI_065

3D structure

PDB id

28UI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UAAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UI_065 not in the Motif Atlas

Geometric match to IL_9H3G_127

Geometric discrepancy: 0.1688

The information below is about IL_9H3G_127

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58355.4

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

45

Unit IDs

28UI|1|A|U|1445
28UI|1|A|A|1446
28UI|1|A|A|1447
28UI|1|A|C|1448
*
28UI|1|A|G|1454
28UI|1|A|G|1455
28UI|1|A|A|1456
28UI|1|A|G|1457

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20