IL_28UI_089

3D structure

PDB id

28UI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UC*GUUA

Length

6 nucleotides

Bulged bases

28UI|1|a|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UI_089 not in the Motif Atlas

Geometric match to IL_8B0X_088

Geometric discrepancy: 0.0642

The information below is about IL_8B0X_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36175.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

28UI|1|a|U|847
28UI|1|a|C|848
*
28UI|1|a|G|930
28UI|1|a|U|931
28UI|1|a|U|932
28UI|1|a|A|933

Current chains

Chain a

23S rRNA

Nearby chains

Chain y

Large ribosomal subunit protein uL30