IL_28UJ_014

3D structure

PDB id

28UJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

UAGU*AG

Length

6 nucleotides

Bulged bases

28UJ|1|A|G|251

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UJ_014 not in the Motif Atlas

Homologous match to IL_6CZR_405

Geometric discrepancy: 0.1844

The information below is about IL_6CZR_405

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47074.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

28UJ|1|A|U|249
28UJ|1|A|A|250
28UJ|1|A|G|251
28UJ|1|A|U|252
*
28UJ|1|A|A|274
28UJ|1|A|G|275

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS17