IL_28UJ_053

3D structure

PDB id

28UJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

28UJ|1|A|A|1257, 28UJ|1|A|A|1280, 28UJ|1|A|C|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UJ_053 not in the Motif Atlas

Geometric match to IL_8B0X_054

Geometric discrepancy: 0.1011

The information below is about IL_8B0X_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

28UJ|1|A|G|1255
28UJ|1|A|A|1256
28UJ|1|A|A|1257
28UJ|1|A|G|1258
*
28UJ|1|A|C|1277
28UJ|1|A|G|1278
28UJ|1|A|G|1279
28UJ|1|A|A|1280
28UJ|1|A|C|1281
28UJ|1|A|C|1282

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

Small ribosomal subunit protein uS3

Chain J

Small ribosomal subunit protein uS10

Chain N

Small ribosomal subunit protein uS14