IL_28UJ_073

3D structure

PDB id

28UJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UJ_073 not in the Motif Atlas

Geometric match to IL_8B0X_073

Geometric discrepancy: 0.1388

The information below is about IL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22028.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

28UJ|1|a|C|274
28UJ|1|a|C|275
28UJ|1|a|U|276
28UJ|1|a|G|277
28UJ|1|a|A|278
28UJ|1|a|A|279
28UJ|1|a|U|280
28UJ|1|a|C|281
*
28UJ|1|a|G|359
28UJ|1|a|U|360
28UJ|1|a|G|361
28UJ|1|a|A|362
28UJ|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains