IL_28UJ_078
3D structure
- PDB id
- 28UJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.16 Å
Loop
- Sequence
- UUAAC*GGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28UJ_078 not in the Motif Atlas
- Homologous match to IL_7A0S_013
- Geometric discrepancy: 0.1812
- The information below is about IL_7A0S_013
- Detailed Annotation
- AAA cross-strand stack
- Broad Annotation
- AAA cross-strand stack
- Motif group
- IL_66798.3
- Basepair signature
- cWW-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
28UJ|1|a|U|606
28UJ|1|a|U|607
28UJ|1|a|A|608
28UJ|1|a|A|609
28UJ|1|a|C|610
*
28UJ|1|a|G|618
28UJ|1|a|G|619
28UJ|1|a|G|620
28UJ|1|a|A|621
28UJ|1|a|G|622
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain e
- Large ribosomal subunit protein uL4
- Chain k
- Large ribosomal subunit protein uL15
Coloring options: