IL_28UJ_110

3D structure

PDB id

28UJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

28UJ|1|a|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UJ_110 not in the Motif Atlas

Homologous match to IL_7A0S_047

Geometric discrepancy: 0.2336

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.3

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

28UJ|1|a|C|1319
28UJ|1|a|C|1320
28UJ|1|a|A|1321
28UJ|1|a|A|1322
28UJ|1|a|C|1323
*
28UJ|1|a|G|1331
28UJ|1|a|G|1332
28UJ|1|a|G|1333

Current chains

Chain a

23S rRNA

Nearby chains

Chain r

Large ribosomal subunit protein uL22

Chain s

Large ribosomal subunit protein uL23