IL_28UJ_114

3D structure

PDB id

28UJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

28UJ|1|a|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UJ_114 not in the Motif Atlas

Homologous match to IL_7A0S_051

Geometric discrepancy: 0.4852

The information below is about IL_7A0S_051

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.3

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

24

Unit IDs

28UJ|1|a|C|1417
28UJ|1|a|G|1418
28UJ|1|a|A|1419
28UJ|1|a|A|1420
28UJ|1|a|G|1421
*
28UJ|1|a|C|1577
28UJ|1|a|U|1578
28UJ|1|a|A|1579
28UJ|1|a|A|1580
28UJ|1|a|G|1581

Current chains

Chain a

23S rRNA

Nearby chains