IL_28UJ_162
3D structure
- PDB id
- 28UJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.16 Å
Loop
- Sequence
- UCACU*AAA
- Length
- 8 nucleotides
- Bulged bases
- 28UJ|1|a|A|2726
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28UJ_162 not in the Motif Atlas
- Homologous match to IL_7A0S_095
- Geometric discrepancy: 0.1536
- The information below is about IL_7A0S_095
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.14
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 22
Unit IDs
28UJ|1|a|U|2680
28UJ|1|a|C|2681
28UJ|1|a|A|2682
28UJ|1|a|C|2683
28UJ|1|a|U|2684
*
28UJ|1|a|A|2725
28UJ|1|a|A|2726
28UJ|1|a|A|2727
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- Large ribosomal subunit protein uL3
- Chain j
- Large ribosomal subunit protein uL14
- Chain m
- Large ribosomal subunit protein bL17
- Chain o
- Large ribosomal subunit protein bL19
Coloring options: