IL_28UK_073

3D structure

PDB id

28UK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UK_073 not in the Motif Atlas

Geometric match to IL_8B0X_073

Geometric discrepancy: 0.1622

The information below is about IL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22028.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

28UK|1|a|C|274
28UK|1|a|C|275
28UK|1|a|U|276
28UK|1|a|G|277
28UK|1|a|A|278
28UK|1|a|A|279
28UK|1|a|U|280
28UK|1|a|C|281
*
28UK|1|a|G|359
28UK|1|a|U|360
28UK|1|a|G|361
28UK|1|a|A|362
28UK|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains