IL_28UK_157

3D structure

PDB id

28UK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

28UK|1|a|A|2572, 28UK|1|a|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UK_157 not in the Motif Atlas

Homologous match to IL_7A0S_090

Geometric discrepancy: 0.1762

The information below is about IL_7A0S_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.4

Basepair signature

cWW-cWW

Number of instances in this motif group

22

Unit IDs

28UK|1|a|C|2512
28UK|1|a|A|2513
*
28UK|1|a|U|2571
28UK|1|a|A|2572
28UK|1|a|C|2573
28UK|1|a|G|2574

Current chains

Chain a

23S rRNA

Nearby chains

Chain Y

Transfer RNA; tRNA

Chain d

Large ribosomal subunit protein uL3

Chain i

Large ribosomal subunit protein uL13