IL_28UL_054

3D structure

PDB id

28UL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UL_054 not in the Motif Atlas

Geometric match to IL_8B0X_055

Geometric discrepancy: 0.1129

The information below is about IL_8B0X_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.4

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

28UL|1|A|C|1259
28UL|1|A|U|1260
28UL|1|A|A|1261
28UL|1|A|C|1262
28UL|1|A|C|1263
*
28UL|1|A|G|1272
28UL|1|A|C|1273
28UL|1|A|A|1274
28UL|1|A|A|1275
28UL|1|A|G|1276

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14

Chain S

Small ribosomal subunit protein uS19