IL_28UL_073

3D structure

PDB id

28UL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UL_073 not in the Motif Atlas

Geometric match to IL_8B0X_073

Geometric discrepancy: 0.1705

The information below is about IL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22028.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

28UL|1|a|C|274
28UL|1|a|C|275
28UL|1|a|U|276
28UL|1|a|G|277
28UL|1|a|A|278
28UL|1|a|A|279
28UL|1|a|U|280
28UL|1|a|C|281
*
28UL|1|a|G|359
28UL|1|a|U|360
28UL|1|a|G|361
28UL|1|a|A|362
28UL|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains