IL_28UL_087

3D structure

PDB id

28UL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AAUU*AU

Length

6 nucleotides

Bulged bases

28UL|1|a|U|846

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UL_087 not in the Motif Atlas

Geometric match to IL_8B0X_087

Geometric discrepancy: 0.1633

The information below is about IL_8B0X_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_79144.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

28UL|1|a|A|844
28UL|1|a|A|845
28UL|1|a|U|846
28UL|1|a|U|847
*
28UL|1|a|A|933
28UL|1|a|U|934

Current chains

Chain a

23S rRNA

Nearby chains

Chain y

Large ribosomal subunit protein uL30