IL_28UL_158

3D structure

PDB id

28UL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

28UL|1|a|A|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UL_158 not in the Motif Atlas

Homologous match to IL_7A0S_091

Geometric discrepancy: 0.0843

The information below is about IL_7A0S_091

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_94991.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

17

Unit IDs

28UL|1|a|U|2522
28UL|1|a|G|2523
*
28UL|1|a|C|2540
28UL|1|a|A|2541
28UL|1|a|A|2542
28UL|1|a|G|2543

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36A

Chain i

Large ribosomal subunit protein uL13