IL_28UL_169

3D structure

PDB id

28UL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UL_169 not in the Motif Atlas

Geometric match to IL_8B0X_169

Geometric discrepancy: 0.0328

The information below is about IL_8B0X_169

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60988.4

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

28UL|1|a|G|2843
28UL|1|a|G|2844
28UL|1|a|U|2845
28UL|1|a|G|2846
*
28UL|1|a|C|2870
28UL|1|a|U|2871
28UL|1|a|A|2872
28UL|1|a|A|2873
28UL|1|a|C|2874

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain m

Large ribosomal subunit protein bL17

Chain o

Large ribosomal subunit protein bL19