IL_28UM_074

3D structure

PDB id

28UM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UM_074 not in the Motif Atlas

Geometric match to IL_8B0X_073

Geometric discrepancy: 0.1738

The information below is about IL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22028.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

28UM|1|a|C|274
28UM|1|a|C|275
28UM|1|a|U|276
28UM|1|a|G|277
28UM|1|a|A|278
28UM|1|a|A|279
28UM|1|a|U|280
28UM|1|a|C|281
*
28UM|1|a|G|359
28UM|1|a|U|360
28UM|1|a|G|361
28UM|1|a|A|362
28UM|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains