IL_28UN_038

3D structure

PDB id

28UN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

28UN|1|A|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UN_038 not in the Motif Atlas

Homologous match to IL_6CZR_147

Geometric discrepancy: 0.101

The information below is about IL_6CZR_147

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

28UN|1|A|G|922
28UN|1|A|A|923
*
28UN|1|A|U|1393
28UN|1|A|A|1394
28UN|1|A|C|1395

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein uS5