IL_28UN_073

3D structure

PDB id

28UN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UN_073 not in the Motif Atlas

Geometric match to IL_8B0X_073

Geometric discrepancy: 0.179

The information below is about IL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22028.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

28UN|1|a|C|274
28UN|1|a|C|275
28UN|1|a|U|276
28UN|1|a|G|277
28UN|1|a|A|278
28UN|1|a|A|279
28UN|1|a|U|280
28UN|1|a|C|281
*
28UN|1|a|G|359
28UN|1|a|U|360
28UN|1|a|G|361
28UN|1|a|A|362
28UN|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains