IL_28UN_083

3D structure

PDB id

28UN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UN_083 not in the Motif Atlas

Geometric match to IL_8B0X_083

Geometric discrepancy: 0.0597

The information below is about IL_8B0X_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.4

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

28UN|1|a|U|703
28UN|1|a|G|704
28UN|1|a|A|705
28UN|1|a|A|706
28UN|1|a|G|707
*
28UN|1|a|U|724
28UN|1|a|G|725
28UN|1|a|G|726
28UN|1|a|A|727
28UN|1|a|G|728

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2