IL_28UN_103

3D structure

PDB id

28UN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GAAG*CGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UN_103 not in the Motif Atlas

Geometric match to IL_8B0X_103

Geometric discrepancy: 0.0741

The information below is about IL_8B0X_103

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15225.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

28UN|1|a|G|1038
28UN|1|a|A|1039
28UN|1|a|A|1040
28UN|1|a|G|1041
*
28UN|1|a|C|1114
28UN|1|a|G|1115
28UN|1|a|G|1116
28UN|1|a|C|1117

Current chains

Chain a

23S rRNA

Nearby chains

Chain g

Large ribosomal subunit protein uL6

Chain l

Large ribosomal subunit protein uL16

Chain u

Large ribosomal subunit protein bL25