IL_28UN_118

3D structure

PDB id

28UN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UN_118 not in the Motif Atlas

Homologous match to IL_7A0S_056

Geometric discrepancy: 0.5401

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.4

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

28UN|1|a|U|1474
28UN|1|a|G|1475
28UN|1|a|U|1476
28UN|1|a|A|1477
28UN|1|a|G|1478
*
28UN|1|a|U|1513
28UN|1|a|G|1514
28UN|1|a|A|1515
28UN|1|a|G|1516
28UN|1|a|G|1517

Current chains

Chain a

23S rRNA

Nearby chains