IL_28UN_148

3D structure

PDB id

28UN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

28UN|1|a|U|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UN_148 not in the Motif Atlas

Geometric match to IL_8B0X_149

Geometric discrepancy: 0.1175

The information below is about IL_8B0X_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

28UN|1|a|U|2401
28UN|1|a|U|2402
28UN|1|a|C|2403
*
28UN|1|a|G|2414
28UN|1|a|G|2415

Current chains

Chain a

23S rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL33

Chain 2

Large ribosomal subunit protein bL35

Chain k

Large ribosomal subunit protein uL15