IL_28ZV_002
3D structure
- PDB id
- 28ZV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 48S PIC with mRNA (non-Kozak)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAA*UGA(OMC)G
- Length
- 9 nucleotides
- Bulged bases
- 28ZV|1|S2|A|516
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28ZV_002 not in the Motif Atlas
- Geometric match to IL_8GLP_190
- Geometric discrepancy: 0.0637
- The information below is about IL_8GLP_190
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.5
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 50
Unit IDs
28ZV|1|S2|C|37
28ZV|1|S2|A|38
28ZV|1|S2|A|39
28ZV|1|S2|A|40
*
28ZV|1|S2|U|514
28ZV|1|S2|G|515
28ZV|1|S2|A|516
28ZV|1|S2|OMC|517
28ZV|1|S2|G|518
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SE
- Small ribosomal subunit protein eS4, X isoform
- Chain SJ
- 40S ribosomal protein S9
- Chain SY
- 40S ribosomal protein S24
Coloring options: