IL_28ZV_050

3D structure

PDB id

28ZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with mRNA (non-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28ZV_050 not in the Motif Atlas

Homologous match to IL_9PN5_190

Geometric discrepancy: 0.0786

The information below is about IL_9PN5_190

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.4

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

21

Unit IDs

28ZV|1|S2|C|1047
28ZV|1|S2|G|1048
28ZV|1|S2|A|1049
28ZV|1|S2|A|1050
28ZV|1|S2|G|1051
*
28ZV|1|S2|C|1067
28ZV|1|S2|G|1068
28ZV|1|S2|U|1069
28ZV|1|S2|A|1070
28ZV|1|S2|G|1071

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SO

40S ribosomal protein S14

Chain Sa

40S ribosomal protein S26