IL_28ZY_087
3D structure
- PDB id
- 28ZY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 48S PIC with mRNA (Kozak_2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAU*AGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28ZY_087 not in the Motif Atlas
- Homologous match to IL_9H3G_238
- Geometric discrepancy: 0.2114
- The information below is about IL_9H3G_238
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.5
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 50
Unit IDs
28ZY|1|S2|C|1717
28ZY|1|S2|G|1718
28ZY|1|S2|A|1719
28ZY|1|S2|U|1720
*
28ZY|1|S2|A|1813
28ZY|1|S2|G|1814
28ZY|1|S2|A|1815
28ZY|1|S2|G|1816
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain Ln
- 60S ribosomal protein L41
- Chain SX
- 40S ribosomal protein S23
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