IL_2B6G_001

3D structure

PDB id

2B6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNA recognition by the Vts1 SAM domain

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UC*GCA

Length

5 nucleotides

Bulged bases

2B6G|1|B|C|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2B6G_001 not in the Motif Atlas

Geometric match to IL_8GLP_055

Geometric discrepancy: 0.3063

The information below is about IL_8GLP_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

2B6G|1|B|U|7
2B6G|1|B|C|8
*
2B6G|1|B|G|11
2B6G|1|B|C|12
2B6G|1|B|A|13

Current chains

Chain B

5'-R(*GP*GP*AP*GP*GP*CP*UP*CP*UP*GP*GP*CP*AP*GP*CP*UP*UP*UP*C)-3'

Nearby chains

Chain A

Vts1p