IL_2D3O_002

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_002 not in the Motif Atlas

Homologous match to IL_5J7L_245

Geometric discrepancy: 0.1781

The information below is about IL_5J7L_245

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

2D3O|1|0|G|24
2D3O|1|0|U|25
2D3O|1|0|G|26
2D3O|1|0|G|27
2D3O|1|0|A|28
2D3O|1|0|U|29
2D3O|1|0|G|30
*
2D3O|1|0|C|520
2D3O|1|0|U|521
2D3O|1|0|G|522
2D3O|1|0|A|523
2D3O|1|0|A|524
2D3O|1|0|A|525
2D3O|1|0|C|526

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains