IL_2D3O_008

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GUUAGUAG*CGAACCC

Length

15 nucleotides

Bulged bases

2D3O|1|0|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_008 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.1947

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

2D3O|1|0|G|215
2D3O|1|0|U|216
2D3O|1|0|U|217
2D3O|1|0|A|218
2D3O|1|0|G|219
2D3O|1|0|U|220
2D3O|1|0|A|221
2D3O|1|0|G|222
*
2D3O|1|0|C|230
2D3O|1|0|G|231
2D3O|1|0|A|232
2D3O|1|0|A|233
2D3O|1|0|C|234
2D3O|1|0|C|235
2D3O|1|0|C|236

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains