IL_2D3O_020

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GGA*UAACC

Length

8 nucleotides

Bulged bases

2D3O|1|0|G|789, 2D3O|1|0|A|801, 2D3O|1|0|A|802, 2D3O|1|0|C|803

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_020 not in the Motif Atlas

Homologous match to IL_7RQB_023

Geometric discrepancy: 0.139

The information below is about IL_7RQB_023

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.6

Basepair signature

cWW-cWW

Number of instances in this motif group

7

Unit IDs

2D3O|1|0|G|788
2D3O|1|0|G|789
2D3O|1|0|A|790
*
2D3O|1|0|U|800
2D3O|1|0|A|801
2D3O|1|0|A|802
2D3O|1|0|C|803
2D3O|1|0|C|804

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains