IL_2D3O_043

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

2D3O|1|0|A|1099

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_043 not in the Motif Atlas

Homologous match to IL_1MMS_004

Geometric discrepancy: 0.565

The information below is about IL_1MMS_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

26

Unit IDs

2D3O|1|0|G|1098
2D3O|1|0|A|1099
2D3O|1|0|G|1100
2D3O|1|0|U|1101
2D3O|1|0|G|1102
*
2D3O|1|0|C|1111
2D3O|1|0|U|1112
2D3O|1|0|C|1113

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains