IL_2D3O_051

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UAC*GAG

Length

6 nucleotides

Bulged bases

2D3O|1|0|A|1233

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_051 not in the Motif Atlas

Geometric match to IL_7A0S_044

Geometric discrepancy: 0.2035

The information below is about IL_7A0S_044

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

2D3O|1|0|U|1232
2D3O|1|0|A|1233
2D3O|1|0|C|1234
*
2D3O|1|0|G|1241
2D3O|1|0|A|1242
2D3O|1|0|G|1243

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains