IL_2D3O_054

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

2D3O|1|0|G|1345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_054 not in the Motif Atlas

Homologous match to IL_7A0S_047

Geometric discrepancy: 0.152

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

2D3O|1|0|G|1332
2D3O|1|0|G|1333
2D3O|1|0|A|1334
2D3O|1|0|A|1335
2D3O|1|0|G|1336
*
2D3O|1|0|C|1344
2D3O|1|0|G|1345
2D3O|1|0|C|1346

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 1

Trigger Factor

Chain R

50S RIBOSOMAL PROTEIN L23